MirGeneDB ID | Gja-Mir-430-o41 |
Family name |
MIR-430 (all species) |
Seed |
AAGUGCU |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Mir-430-o40
Gja-Mir-430-P3
|
Orthologues |
Hsa-Mir-430-P41a
Hsa-Mir-430-P41b
Pab-Mir-430-P41a
Pab-Mir-430-P41b
|
Node of Origin (locus) |
G. japonicus
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015175473.1: 128972-129034 [+]
|
Precursor (pre-Mir +30nt flank) |
CUCCCACCCAGACGAGGCCUCGGGAAGCCCACGCAGACAGUGGCACUUGCUUGUGAUCAUCCAAUUCAAUUAAGUGCUAUAUUGUUUGUGUGUGUUUUCGGGCCUGGCGCAGCAGCUGUCUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCCCACCCAGACGAGGCC-- G C --| CUUGUGAUCA
UC GGAAGC CACGCAGACA GUGGCACUUG \
GG CUUUUG GUGUGUUUGU UAUCGUGAAU U
CCUCUGUCGACGACGCGGUCC G U UA^ UAACUUAACC
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Gja-Mir-430-o41_5p* |
mirBase accession | None |
Sequence |
0- ACGCAGACAGUGGCACUUGCU -21
Get sequence
|
Mature sequence |
Gja-Mir-430-o41_3p |
mirBase accession | None |
Sequence |
40- UAAGUGCUAUAUUGUUUGUGUGU -63
Get sequence
|