Mir-430-P41a

MirGeneDB ID

Hsa-Mir-430-P41a

Family name

MIR-430 (all species)

Seed

UCUCGAG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-516a-1

Paralogues

Hsa-Mir-430-P1 Hsa-Mir-430-P2 Hsa-Mir-430-P3 Hsa-Mir-430-P4 Hsa-Mir-430-P5 Hsa-Mir-430-P6 Hsa-Mir-430-P7 Hsa-Mir-430-P8a Hsa-Mir-430-P8b Hsa-Mir-430-P9 Hsa-Mir-430-P10 Hsa-Mir-430-P11 Hsa-Mir-430-P12a Hsa-Mir-430-P12b Hsa-Mir-430-P13 Hsa-Mir-430-P14 Hsa-Mir-430-P15 Hsa-Mir-430-P16a Hsa-Mir-430-P16b Hsa-Mir-430-P17 Hsa-Mir-430-P18 Hsa-Mir-430-P19 Hsa-Mir-430-P20 Hsa-Mir-430-P21 Hsa-Mir-430-P22 Hsa-Mir-430-P23 Hsa-Mir-430-P24 Hsa-Mir-430-P25 Hsa-Mir-430-P26 Hsa-Mir-430-P27 Hsa-Mir-430-P28 Hsa-Mir-430-P29a Hsa-Mir-430-P29b Hsa-Mir-430-P29c Hsa-Mir-430-P30 Hsa-Mir-430-P31a Hsa-Mir-430-P31b Hsa-Mir-430-P32 Hsa-Mir-430-P33a Hsa-Mir-430-P33b Hsa-Mir-430-P34a Hsa-Mir-430-P34b Hsa-Mir-430-P35 Hsa-Mir-430-P36 Hsa-Mir-430-P37a Hsa-Mir-430-P37b Hsa-Mir-430-P37c Hsa-Mir-430-P38 Hsa-Mir-430-P39 Hsa-Mir-430-P40a Hsa-Mir-430-P40b Hsa-Mir-430-P41b

Orthologues

Gja-Mir-430-o41 Pab-Mir-430-P41a

Node of Origin (locus)

Hominidae

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr19: 53761148-53761210 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P41a)

Mir-430-P29a chr19: 53712282-53712342 [+] UCSC Ensembl
Mir-430-P30 chr19: 53713361-53713422 [+] UCSC Ensembl
Mir-430-P31a chr19: 53716608-53716668 [+] UCSC Ensembl
Mir-430-P32 chr19: 53720111-53720170 [+] UCSC Ensembl
Mir-430-P29b chr19: 53721081-53721139 [+] UCSC Ensembl
Mir-430-P33a chr19: 53722182-53722241 [+] UCSC Ensembl
Mir-430-P34a chr19: 53725457-53725514 [+] UCSC Ensembl
Mir-430-P35 chr19: 53726928-53726982 [+] UCSC Ensembl
Mir-430-P36 chr19: 53729853-53729911 [+] UCSC Ensembl
Mir-430-P37a chr19: 53731019-53731078 [+] UCSC Ensembl
Mir-430-P38 chr19: 53734892-53734950 [+] UCSC Ensembl
Mir-430-P34b chr19: 53736860-53736922 [+] UCSC Ensembl
Mir-430-P37b chr19: 53739348-53739407 [+] UCSC Ensembl
Mir-430-P29c chr19: 53741332-53741390 [+] UCSC Ensembl
Mir-430-P33b chr19: 53742528-53742587 [+] UCSC Ensembl
Mir-430-P31b chr19: 53748650-53748710 [+] UCSC Ensembl
Mir-430-P39 chr19: 53751226-53751285 [+] UCSC Ensembl
Mir-430-P40a chr19: 53752410-53752470 [+] UCSC Ensembl
Mir-430-P37c chr19: 53754031-53754089 [+] UCSC Ensembl
Mir-430-P41b chr19: 53756756-53756818 [+] UCSC Ensembl
Mir-430-P16b chr19: 53758246-53758304 [+] UCSC Ensembl
Mir-430-P41a chr19: 53761148-53761210 [+] UCSC Ensembl
Mir-430-P40b chr19: 53762358-53762418 [+] UCSC Ensembl
Mir-430-P5 chr19: 53787680-53787738 [+] UCSC Ensembl
Mir-430-P6 chr19: 53787895-53787953 [+] UCSC Ensembl
Mir-430-P7 chr19: 53788710-53788770 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGGAGCAAGAAGAUCUCAGGUUGUGACCUUCUCGAGGAAAGAAGCACUUUCUGUUGUCUGAAAGAAAAGAAAGUGCUUCCUUUCAGAGGGUUACGGUUUGAGAAAAGCAACGUCGAAGUUG

Get precursor sequence

Structure

        10           20        30        40        50        60  
GCUGGAGCAAGAAGAUC---|  GG            C    AAA            GUUGUCU 
                    UCA  UUGUGACCUUCU GAGG   GAAGCACUUUCU       \
                    AGU  GGCAUUGGGAGA UUUC   CUUCGUGAAAGA       G
GUUGAAGCUGCAACGAAAAG^  UU            C    ---            AAAGAAA 
 120       110       100        90           80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-430-P41a_5p

mirBase accession

MIMAT0004770

Sequence

0- UUCUCGAGGAAAGAAGCACUUUCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0004770
TargetScanVert: hsa-miR-516a-5p
TargetMiner: hsa-miR-516a-5p
miRDB: MIMAT0004770

Star sequence

Hsa-Mir-430-P41a_3p*

mirBase accession

MIMAT0006778

Sequence

41- AAAGUGCUUCCUUUCAGAGGGU -63

Get sequence

Proposed targets

microrna.org: MIMAT0006778
TargetScanVert: hsa-miR-516a-3p
TargetMiner: hsa-miR-516a-3p
miRDB: MIMAT0006778