MirGeneDB ID | Cja-Mir-430-P10 |
Family name |
MIR-430 (all species) |
Seed |
UUCAAGC |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-430-P1
Cja-Mir-430-P2
Cja-Mir-430-P3
Cja-Mir-430-P4
Cja-Mir-430-P5
Cja-Mir-430-P6
Cja-Mir-430-P7
Cja-Mir-430-P8
Cja-Mir-430-P9
Cja-Mir-430-P11
|
Orthologues |
Hsa-Mir-430-P10
Mml-Mir-430-P10
Pab-Mir-430-P10
Sha-Mir-430-o10
|
Node of Origin (locus) |
Simiiformes
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 45465263-45465320 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUCCUUGGGGAGUGAUGCUCAGUCUGUGAUUUCAAGCUGGGGGUGCUUUUCUGUGACUGGUGAAAAGCACCUGCAGGGCUUGAACCCCACAGUUUGAGAGCAAGCAUCUAAGGAGGU
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUCCUUGGGGAGUGAUG- U AU- --| G UGUG
CUCAG CUGUG UUCAAGC UG GGGUGCUUUUC A
GAGUU GACAC AAGUUCG AC UCCACGAAAAG C
UGGAGGAAUCUACGAACGA U CCC GG^ G UGGU
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Cja-Mir-430-P10_5p (predicted) |
mirBase accession | None |
Sequence |
0- UUUCAAGCUGGGGGUGCUUUUC -22
Get sequence
|
Star sequence |
Cja-Mir-430-P10_3p* (predicted) |
mirBase accession | None |
Sequence |
34- AAAGCACCUGCAGGGCUUGAACCC -58
Get sequence
|