Mir-430-o10

MirGeneDB ID

Sha-Mir-430-o10

Family name

MIR-430 (all species)

Seed

CCCUAAC

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-430-o11 Sha-Mir-430-o12 Sha-Mir-430-o13 Sha-Mir-430-o14 Sha-Mir-430-o15 Sha-Mir-430-o16 Sha-Mir-430-o17 Sha-Mir-430-o18 Sha-Mir-430-o19 Sha-Mir-430-o20 Sha-Mir-430-o21 Sha-Mir-430-o22 Sha-Mir-430-o23 Sha-Mir-430-o24 Sha-Mir-430-o25 Sha-Mir-430-o26 Sha-Mir-430-o27 Sha-Mir-430-o29 Sha-Mir-430-P1 Sha-Mir-430-P2 Sha-Mir-430-P3 Sha-Mir-430-P51

Orthologues

Cja-Mir-430-P10 Hsa-Mir-430-P10 Mml-Mir-430-P10 Pab-Mir-430-P10

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL850554.1: 8373-8431 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAUUGCAGAGGACAUGUCUUUUCUGACACACCCUAACUGAGAGCAUUUAUUGGAUAUUUGGAAAGAUAAGUGCUCUCUUUUUGGGUGAGCCAGGUUGAGGACUAAGCUUCCUAUCAGU

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Structure

        10         20         30        40        50         
GAAUUGCAGAGGACAUG-    U-|   ACA     U  CU             GGAUAU 
                  UCUU  UCUG   CACCC AA  GAGAGCAUUUAUU      \
                  GGAG  GGAC   GUGGG UU  CUCUCGUGAAUAG      U
UGACUAUCCUUCGAAUCA    UU^   CGA     U  UU             AAAGGU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-430-o10_5p

mirBase accession

None

Sequence

0- ACCCUAACUGAGAGCAUUUAUU -22

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Co-mature sequence

Sha-Mir-430-o10_3p

mirBase accession

None

Sequence

37- UAAGUGCUCUCUUUUUGGGUGA -59

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