Mir-430-o17

MirGeneDB ID

Sha-Mir-430-o17

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-430-o10 Sha-Mir-430-o11 Sha-Mir-430-o12 Sha-Mir-430-o13 Sha-Mir-430-o14 Sha-Mir-430-o15 Sha-Mir-430-o16 Sha-Mir-430-o18 Sha-Mir-430-o19 Sha-Mir-430-o20 Sha-Mir-430-o21 Sha-Mir-430-o22 Sha-Mir-430-o23 Sha-Mir-430-o24 Sha-Mir-430-o25 Sha-Mir-430-o26 Sha-Mir-430-o27 Sha-Mir-430-o29 Sha-Mir-430-P1 Sha-Mir-430-P2 Sha-Mir-430-P3 Sha-Mir-430-P51

Orthologues

Hsa-Mir-430-P17 Mml-Mir-430-P17 Pab-Mir-430-P17

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL850554.1: 13105-13161 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGAGAAGCAGCAACAACCCAGUCUUGCACAUCCUAACUCUGAGUCCUUAUUGGAUAUUUGAAGAUAAGUGCUCUCAGUUGGGAUGAGCCAGGCUGAGGACCAACUAUCCAAAGCUU

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Structure

        10          20        30        40        50        
CCGAGAAGCAGCAACAA-  -|     U  A          CU   UC      GGAUA 
                  CC CAGUCU GC CAUCCUAACU  GAG  CUUAUU     \
                  GG GUCGGA CG GUAGGGUUGA  CUC  GAAUAG     U
UUCGAAACCUAUCAACCA  A^     C  A          CU   GU      AAGUU 
     110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-430-o17_5p*

mirBase accession

None

Sequence

0- AUCCUAACUCUGAGUCCUUAUU -22

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Mature sequence

Sha-Mir-430-o17_3p

mirBase accession

None

Sequence

35- UAAGUGCUCUCAGUUGGGAUGA -57

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