MirGeneDB 3.0

MirGeneDB ID

Pve-Mir-92-o98

Family name MIR-92 (all species)
Seed AUUGCAC
Species Vernerds tusk shell (Pictodentalium vernedei)
MiRBase ID
Paralogues Pve-Mir-92-o99  Pve-Mir-92-o100  Pve-Mir-92-o101  Pve-Mir-92-o102 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Dentaliidae
Node of Origin (family) Bilateria
Genome context
(PVE_manual_microRNAloci)
CM062292.1:212134836-212135093: 101-158 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUAUGCGAUGAGACAUACGAUGGUAGUAUAGGUCGUGAUUUUUGCAAUAUUUGUCAUUAAAAUCAAAUUGCACUUGUCCCGGCCUACAUGACCACACUGGCAGCUUAAUGUUAGUUC
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Structure
        10        20          30        40        50         
AAUAUGCGAUGAGACAUACGA--|   A  A       U   UUU      AU   UCAU 
                       UGGU GU UAGGUCG GAU   UGCAAU  UUG    U
                       ACCA UA AUCCGGC CUG   ACGUUA  AAC    A
CUUGAUUGUAAUUCGACGGUCAC^   G  C       C   UUC      --   UAAA 
      110       100        90        80        70          60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as oPveans pending additional data.
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Pve-Mir-92-o98_5p*

mirBase accessionNone
Sequence
0- AGGUCGUGAUUUUUGCAAUAUUUG -24
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Mature sequence

Pve-Mir-92-o98_3p

mirBase accessionNone
Sequence
36- AAUUGCACUUGUCCCGGCCUAC -58
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