MirGeneDB 3.0

MirGeneDB ID

Pve-Mir-92-o100

Family name MIR-92 (all species)
Seed AUUGCAC
Species Vernerds tusk shell (Pictodentalium vernedei)
MiRBase ID
Paralogues Pve-Mir-92-o98  Pve-Mir-92-o99  Pve-Mir-92-o101  Pve-Mir-92-o102 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Dentaliidae
Node of Origin (family) Bilateria
Genome context
(PVE_manual_microRNAloci)
CM062292.1:212132284-212132541: 101-158 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUCUUCACAUGUUUUCCAGCUUCGCGUGACAGACCGAGUGAGUGUAAUCGGUUGUAUCUUUAUUCCAAUUGCACUCGUCCCGGCCUGCCUCGAGGGGUCGUUACCUGCAGUGUGGAAU
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Structure
        10          20        30         40        50        
GUCUUCACAUGUUUUCCA--     G  UGA   A   AG-|         C  UUGUAU 
                    GCUUC CG   CAG CCG   UGAGUGUAAU GG      \
                    UGGGG GC   GUC GGC   GCUCACGUUA CC      C
UAAGGUGUGACGUCCAUUGC     A  UCC   C   CCU^         A  UUAUUU 
      110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as oPveans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pve-Mir-92-o100_5p*

mirBase accessionNone
Sequence
0- AGACCGAGUGAGUGUAAUCGG -21
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Mature sequence

Pve-Mir-92-o100_3p

mirBase accessionNone
Sequence
36- AAUUGCACUCGUCCCGGCCUGC -58
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