MirGeneDB ID | Pve-Mir-92-o102 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Vernerds tusk shell (Pictodentalium vernedei) |
MiRBase ID |
|
Paralogues |
Pve-Mir-92-o98
Pve-Mir-92-o99
Pve-Mir-92-o100
Pve-Mir-92-o101
|
Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
Dentaliidae
|
Node of Origin (family) |
Bilateria
|
Genome context (PVE_manual_microRNAloci) |
CM062292.1:212004109-212004370: 101-162 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGCUUUUAGAGAGUUCCUGGCUUUUGUUCAGAGACUGGGAUGGGCACAAUGCUGAUACUUUAAAACUAGUAUUGCACUCGUCCCGGCCUGUUAACAUGAGCAGCUAUCCACCAGUUUUAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUGCUUUUAGAGAGUUCCUG| U CAG A CA GAUACU
GCUU UGUU AG CUGGGAUGGG CAAUGCU U
CGAG ACAA UC GGCCCUGCUC GUUAUGA U
UUAUUUUGACCACCUAUCGA^ U UUG C AC UCAAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as oPveans pending additional data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pve-Mir-92-o102_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGAGACUGGGAUGGGCACAAUGCU -24
Get sequence
|
Mature sequence |
Pve-Mir-92-o102_3p |
mirBase accession | None |
Sequence |
40- UAUUGCACUCGUCCCGGCCUGU -62
Get sequence
|