MirGeneDB ID | Mgi-Mir-92-o34 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
Mgi-Mir-92-o32
Mgi-Mir-92-o33
Mgi-Mir-92-o35
|
Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
C. gigas
|
Node of Origin (family) |
Bilateria
|
Genome context (CGI_GCA_000297895.1) |
scaffold459: 311201-311262 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUUAGAGAUAUUAGAAAGUCAUGCAAUGUAGGCUGUGAAAGGUAGCAAUCAUUUCAUGACGUUUACGUGAAUUGCACCUGUCCCGGCCUGCACUGGAUGUCGAUUACAACGGAGACCCGGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUUUAGAGAUAUUAGAAAGU--| G A U A A - UUCAUG
CAU CA UGUAGGCUG GA AGGU GCAAU CAU A
GUA GU ACGUCCGGC CU UCCA CGUUA GUG C
AGGCCCAGAGGCAACAUUAGCU^ G C C G - A CAUUUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Star sequence |
Mgi-Mir-92-o34_5p* |
mirBase accession | None |
Sequence |
0- AGGCUGUGAAAGGUAGCAAUCAUUUCA -27
Get sequence
|
Mature sequence |
Mgi-Mir-92-o34_3p |
mirBase accession | None |
Sequence |
40- AAUUGCACCUGUCCCGGCCUGC -62
Get sequence
|