Mir-92-o33

MirGeneDB ID

Mgi-Mir-92-o33

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Mgi-Mir-92-o32 Mgi-Mir-92-o34 Mgi-Mir-92-o35

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

C. gigas

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold459: 320194-320253 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GGAGGGCUUCUAUUAUCAGGGGUCUUGUAUGGGCUGGAGCGGCUGCAAAGCAGUGAUGGUGGUUUCUGUAUUGCACUCGUCCCGGCCGAUAUCUGGACCUCCCUUCCUUCAUCCUCCCUC

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Structure

        10         20         30        40        50         
GGAGGGCUUCUAUUAUCA-       U-|   G      AG  GC     A   GUGAUG 
                   GGGGUCU  GUAU GGCUGG  CG  UGCAA GCA      G
                   CUCCAGG  UAUA CCGGCC  GC  ACGUU UGU      U
CUCCCUCCUACUUCCUUCC       UC^   G      CU  UC     A   CUUUGG 
.       110       100        90        80        70        60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Star sequence

Mgi-Mir-92-o33_5p*

mirBase accession

None

Sequence

0- GGGCUGGAGCGGCUGCAAAGCA -22

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Mature sequence

Mgi-Mir-92-o33_3p

mirBase accession

None

Sequence

38- UAUUGCACUCGUCCCGGCCGAU -60

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