| MirGeneDB ID | Llo-Mir-92-o130 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Bootlace worm (Lineus longissimus) |
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| MiRBase ID |
|
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| Paralogues |
Llo-Mir-92-o126
Llo-Mir-92-o127
Llo-Mir-92-o128
Llo-Mir-92-o129
Llo-Mir-92-o131
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
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| Node of Origin (locus) |
Lineidae
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(GCA_910592395.2_tnLinLong1) |
OU343005.1: 13343151-13343214 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAAAAAUGGCUUGGCCCAUGUUGUCGAGCAGGAUGCGACUUGUGCAAGAUUCUGUGACUAACUUAACUUGGAAUUGCACUUGUCCCGGCCUGUUUGCUGUAACAUGAUUUCAUCGCCAUGACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CAAAAAAUGGCUUGGCCC U--| A C UU GA UGUGACUA
AUGUUG CGAGCAGG UG GAC GUGCAA UUC \
UACAAU GUUUGUCC GC CUG CACGUU AGG A
CCAGUACCGCUACUUUAG GUC^ G C UU A- UUCAAUUC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Llo-Mir-92-o130_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGGAUGCGACUUGUGCAAGAUUC -23
Get sequence
|
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| Mature sequence |
Llo-Mir-92-o130_3p |
| mirBase accession | None |
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| Sequence |
42- AAUUGCACUUGUCCCGGCCUGU -64
Get sequence
|
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