MirGeneDB 3.0

MirGeneDB ID

Llo-Mir-92-o127

Family name MIR-92 (all species)
Seed AUUGCAC
Species Bootlace worm (Lineus longissimus)
MiRBase ID
Paralogues Llo-Mir-92-o126  Llo-Mir-92-o128  Llo-Mir-92-o129  Llo-Mir-92-o130  Llo-Mir-92-o131 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Lineidae
Node of Origin (family) Bilateria
Genome context
(GCA_910592395.2_tnLinLong1)
OU343005.1: 13162175-13162233 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGACUGAAUGACCUCAUGGCUUUGUUGAACAGGUCGUAACGGGAUGCAACUUUUGUCUUCACUUGCAAAUUGCACUCGUCCCGGCCUGCAGGUCGUAACGGGAUGCAACUUUUGUCUUCACUUGCAAAUUGCACUCGUCCCGGCCUGCUUAACACAAGUCCCUUUCACAAACUGCCUG
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Structure
        10         20         30        40        50         
GGACUGAAUGACCUCAU-     -|     ACAGGUCGUAACGGGAUGCAACUUUUGUCU 
                  GGCUU UGUUGA                              \
                  CUGAA ACAAUU                              U
GUCCGUCAAACACUUUCC     C^     CGUCCGGCCCUGCUCACGUUAAACGUUCAC 
       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
No No No No No No
Mature sequence

Llo-Mir-92-o127_5p

mirBase accessionNone
Sequence
37- AAUUGCACUCGUCCCGGCCUGC -59
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Star sequence

Llo-Mir-92-o127_3p* (predicted)

mirBase accessionNone
Sequence
0- AGGUCGUAACGGGAUGCAACUUU -23
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