MirGeneDB 3.0

MirGeneDB ID

Llo-Mir-92-o128

Family name MIR-92 (all species)
Seed AUUGCAC
Species Bootlace worm (Lineus longissimus)
MiRBase ID
Paralogues Llo-Mir-92-o126  Llo-Mir-92-o127  Llo-Mir-92-o129  Llo-Mir-92-o130  Llo-Mir-92-o131 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Lineidae
Node of Origin (family) Bilateria
Genome context
(GCA_910592395.2_tnLinLong1)
OU343005.1: 13162433-13162490 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCUCAUUGGGAGAUUGGAACUGACCUGAAGGUCGUGAAGAGGGCAAUGUUUGUUAAAAUAUGCAAAUUGCACUCGUCCCGGCCUGCCAGGUCUGUUCUUUAGCCUCGCUGUGACCA
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Structure
        10         20        30         40        50        
CCUCUCAUUGGGAGAUU-     U      A-|     U  A   G     GUUUGUUA 
                  GGAAC GACCUG  AGGUCG GA GAG GCAAU        A
                  UCUUG CUGGAC  UCCGGC CU CUC CGUUA        A
ACCAGUGUCGCUCCGAUU     U      CG^     C  G   A     AACGUAUA 
      110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
No No No No No No
Star sequence

Llo-Mir-92-o128_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGUCGUGAAGAGGGCAAUGUUU -23
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Mature sequence

Llo-Mir-92-o128_3p

mirBase accessionNone
Sequence
36- AAUUGCACUCGUCCCGGCCUGC -58
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