| MirGeneDB ID | Agr-Mir-92-o110 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
West Indian fuzzy chiton (Acanthopleura granulata ) |
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| MiRBase ID |
|
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| Paralogues |
Agr-Mir-92-o109
Agr-Mir-92-o111
Agr-Mir-92-o112
Agr-Mir-92-o113
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
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| Node of Origin (locus) |
A. granulata
|
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| Node of Origin (family) |
Bilateria
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Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula) |
JABBOT010000006.1: 4003172-4003231 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACUCUCCUGUGCUUAUGUCUGCUGGUAGGCAGGCCUUGAAAGGUGCAACAUUUUGUGAUAUAAAAUGAAAUUGCACUUGUCCCGGCCUGCCGACCUAAGACAUGGACGACAUGGCCUAUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACUCUCCUGUGCUUAUG---| GCU A UU A AC GUGAU
UCU GGU GGCAGGCC GA AGGUGCA AUUUU A
AGA CCA CCGUCCGG CU UUCACGU UAAAG U
UUAUCCGGUACAGCAGGUAC^ AU- G CC G -- UAAAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Agr-Mir-92-o110_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGGCCUUGAAAGGUGCAACAUUUU -24
Get sequence
|
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| Mature sequence |
Agr-Mir-92-o110_3p |
| mirBase accession | None |
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| Sequence |
38- AAUUGCACUUGUCCCGGCCUGC -60
Get sequence
|
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