MirGeneDB 3.0

MirGeneDB ID

Agr-Mir-92-o112

Family name MIR-92 (all species)
Seed AUUGCAC
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues Agr-Mir-92-o109  Agr-Mir-92-o110  Agr-Mir-92-o111  Agr-Mir-92-o113 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) A. granulata
Node of Origin (family) Bilateria
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)
JABBOT010000006.1: 4002146-4002204 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUCUUUCGGGUUCUGUCCAGAGUUGUGGCGGGCGAGACAUGUGCAACUUGCUGAGCUCUGAAGACAAAUUGCACUUGUCCCGGCCUGCCUCUGCUCUGGAAAUAUCAGUCGUGUGAUU
Get precursor sequence
Structure
        10          20        30         40        50        
AUUCUUUCGGGUUCUGU--       UGU      -| A    U      C   CUGAGC 
                   CCAGAGU   GGCGGG CG GACA GUGCAA UUG      U
                   GGUCUCG   CCGUCC GC CUGU CACGUU AAC      C
UUAGUGUGCUGACUAUAAA       UCU      G^ C    U      A   AGAAGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Agr-Mir-92-o112_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGCGAGACAUGUGCAACUUG -21
Get sequence
Mature sequence

Agr-Mir-92-o112_3p

mirBase accessionNone
Sequence
37- AAUUGCACUUGUCCCGGCCUGC -59
Get sequence