MirGeneDB 3.0

MirGeneDB ID

Agr-Mir-92-o109

Family name MIR-92 (all species)
Seed AUUGCAC
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues Agr-Mir-92-o110  Agr-Mir-92-o111  Agr-Mir-92-o112  Agr-Mir-92-o113 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) A. granulata
Node of Origin (family) Bilateria
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)
JABBOT010000006.1: 4011002-4011063 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCGAGAAGAGGCAUGGAAGUCACUGGCUGAGGCAGGAAUAGGUGCAAUGUGGAUGAUGUUUGAAACACAUAUUGCACUUGUCCCGGCCUCUGUACGUGGACUGACAUCAACUGUGCCAUAG
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Structure
        10         20         30        40        50        60
ACCGAGAAGAGGCAUGGA-    ACUG-| U     A  A              GAUGAUG 
                   AGUC     GC GAGGC GG AUAGGUGCAAUGUG       U
                   UCAG     UG CUCCG CC UGUUCACGUUAUAC       U
GAUACCGUGUCAACUACAG    GUGCA^ U     G  C              ACAAAGU 
120       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Agr-Mir-92-o109_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGCAGGAAUAGGUGCAAUGUG -22
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Mature sequence

Agr-Mir-92-o109_3p (predicted)

mirBase accessionNone
Sequence
40- UAUUGCACUUGUCCCGGCCUCU -62
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