MirGeneDB ID | Pau-Mir-92-o123 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Horseshoe worm (Phoronis australis) |
MiRBase ID |
|
Paralogues |
Pau-Mir-92-o120
Pau-Mir-92-o121
Pau-Mir-92-o122
Pau-Mir-92-o124
Pau-Mir-92-o125
|
Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
P. australis
|
Node of Origin (family) |
Bilateria
|
Genome context (Phoronis_australis_GCA_002633005) |
NMRA01000212.1: 607025-607083 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUGCCAAGCAAGUAAAAGCUUCUCUGCUGAGGUUGUGAUGGGAGCAAUGUUUUACGAUUACUGAGAUAUUGCACUCGUCCCGGCCUGCGUAGGAUAGCUCUCGACAUAGCAAGUACAU
Get precursor sequence
|
Structure | 10 20 30 40 50
GCUGCCAAGCAAGUAAA--| UC UG U A UUACGA
AGCU UCUGC AGGUUG GAUGGG GCAAUGUU \
UCGA GGAUG UCCGGC CUGCUC CGUUAUAG U
UACAUGAACGAUACAGCUC^ UA CG C A AGUCAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Pau-Mir-92-o123_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGUUGUGAUGGGAGCAAUGUU -22
Get sequence
|
Mature sequence |
Pau-Mir-92-o123_3p |
mirBase accession | None |
Sequence |
37- UAUUGCACUCGUCCCGGCCUGC -59
Get sequence
|