MirGeneDB 3.0

MirGeneDB ID

Pau-Mir-92-o122

Family name MIR-92 (all species)
Seed AUUGCAC
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues Pau-Mir-92-o120  Pau-Mir-92-o121  Pau-Mir-92-o123  Pau-Mir-92-o124  Pau-Mir-92-o125 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. australis
Node of Origin (family) Bilateria
Genome context
(Phoronis_australis_GCA_002633005)
NMRA01000128.1: 171049-171107 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUAUGUAUGCGCAUUGAAGUGGGUUGUAGUAGGCCGUGUCAGGAGCAAUAUUUGUGUGUCCUCAUCAAAUUGCACUUGUCCCGGCCUACAGCAGAUCCGUGCUUUCUUCAUCAUCGCAC
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Structure
        10         20         30        40        50         
UUAUGUAUGCGCAUUGAAG-     -|  A        UGU    A     AUUUGUGUG 
                    UGGGU UGU GUAGGCCG   CAGG GCAAU         \
                    GCCUA ACG CAUCCGGC   GUUC CGUUA         U
CACGCUACUACUUCUUUCGU     G^  A        CCU    A     AACUACUCC 
       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Pau-Mir-92-o122_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGCCGUGUCAGGAGCAAUAUUU -23
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Mature sequence

Pau-Mir-92-o122_3p

mirBase accessionNone
Sequence
37- AAUUGCACUUGUCCCGGCCUAC -59
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