MirGeneDB 3.0

MirGeneDB ID

Pau-Mir-92-o125

Family name MIR-92 (all species)
Seed AUUGCAC
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues Pau-Mir-92-o120  Pau-Mir-92-o121  Pau-Mir-92-o122  Pau-Mir-92-o123  Pau-Mir-92-o124 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. australis
Node of Origin (family) Bilateria
Genome context
(Phoronis_australis_GCA_002633005)
NMRA01000212.1: 607618-607674 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUCGAGGAUGCCUUCUGAAAGGGCCCAUGGAGGUCGUGGUCUGUGCAAACUACUUUUCUCAGUUAGAUUGCACUCGUCCCGGCCUGCGGUAAGCCUCUAUAAACACCGGCCUGCAGU
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Structure
        10        20          30        40         50        
GUCGAGGAUGCCUUCUGAA  -   CCA-| G      U  UCU-      A   CUUUU 
                   AG GGC    UG AGGUCG GG    GUGCAA CUA     \
                   UC CCG    GC UCCGGC CC    CACGUU GAU     C
UGACGUCCGGCCACAAAUA  U   AAUG^ G      -  UGCU      A   UGACU 
     110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pau-Mir-92-o125_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGUCGUGGUCUGUGCAAACUA -22
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Mature sequence

Pau-Mir-92-o125_3p

mirBase accessionNone
Sequence
35- GAUUGCACUCGUCCCGGCCUGC -57
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