| MirGeneDB ID | Pau-Mir-92-o124 |
|---|
| Family name |
MIR-92 (all species) |
|---|
| Seed |
AUUGCAC |
|---|
| Species |
Horseshoe worm (Phoronis australis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Pau-Mir-92-o120
Pau-Mir-92-o121
Pau-Mir-92-o122
Pau-Mir-92-o123
Pau-Mir-92-o125
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
P. australis
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(Phoronis_australis_GCA_002633005) |
NMRA01000212.1: 607153-607211 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UACUAAAUGAUCAAUAUGUUUGCUGAGAACAGGUUCGACAUGAGAGCAAUAGUUGAUAUUAUAAUACCAUUGCACUCGUCUCGGUCUGCUCUGAGCAAGCGUUUUCAGCGGUCACAGCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UACUAAAUGAUCAAUAU--| G A U C A A UGAUA
GUUUGCU AGA CAGGU CGA AUGAG GCAAU GU U
CGAACGA UCU GUCUG GCU UGCUC CGUUA CA U
UCGACACUGGCGACUUUUG^ G C - C A C UAAUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pau-Mir-92-o124_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUUCGACAUGAGAGCAAUAGU -23
Get sequence
|
|---|
| Mature sequence |
Pau-Mir-92-o124_3p |
| mirBase accession | None |
|---|
| Sequence |
37- CAUUGCACUCGUCUCGGUCUGC -59
Get sequence
|
|---|
