| MirGeneDB ID | Snu-Mir-92-o40 |
|---|
| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Peanut worm (Sipunculus nudus) |
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| MiRBase ID |
|
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| Paralogues |
Snu-Mir-92-o36
Snu-Mir-92-o37
Snu-Mir-92-o38
Snu-Mir-92-o39
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Efe-Mir-92-o40
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
S. nudus
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049309.1: 91533788-91533844 [+]
|
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Precursor
(pre-Mir +30nt flank) |
AGAAUCAUACCAGAAACCAAAGGGUUAAGUAGGUCUGGACUUGGGCAACUUGGUAUUUAAAAUCCAAUUGCACUUGUCCCGGCCUGCCCAGCCCUGUCUUAUCAUCACAGAUGUUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAAUCAUACCAGAAACCAA--| AA U UU - C UAUU
AGGGUU GUAGGUC GGAC GG GCAA UUGG U
UCCCGA CGUCCGG CCUG UC CGUU AACC A
ACUUGUAGACACUACUAUUCUG^ CC C U- A - UAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Snu-Mir-92-o40_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUCUGGACUUGGGCAACUUGG -23
Get sequence
|
|---|
| Mature sequence |
Snu-Mir-92-o40_3p |
| mirBase accession | None |
|---|
| Sequence |
35- AAUUGCACUUGUCCCGGCCUGC -57
Get sequence
|
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