MirGeneDB 3.0

MirGeneDB ID

Snu-Mir-92-o37

Family name MIR-92 (all species)
Seed AUUGCAC
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues Snu-Mir-92-o36  Snu-Mir-92-o38  Snu-Mir-92-o39  Snu-Mir-92-o40 
Orthologues Asu-Mir-92  Cel-Mir-92  Cte-Mir-92-o37  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) S. nudus
Node of Origin (family) Bilateria
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)
CM049309.1: 91516975-91517033 [+]
Precursor
(pre-Mir +30nt flank)
UCAAGUGUGGUGACAUGCCAGUGCCAAGGCGGUAGGGAUUUGUGCAUUCUGGCAACAUUUGAGUACAAAUUGCACUUGUCCCGGCCUGCCUUGGUCUGGUAAGAUCAGCUUUGGUAUAA
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Structure
        10           20        30         40        50        
UCAAGUGUGGUGACAUG---|   U        -   A     UU     UUC  GCAACA 
                    CCAG GCCAAGGC GGU GGGAU  GUGCA   UG      U
                    GGUC UGGUUCCG CCG CCCUG  CACGU   AC      U
AAUAUGGUUUCGACUAGAAU^   -        U   G     UU     UAA  AUGAGU 
       110       100         90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Snu-Mir-92-o37_5p* (predicted)

mirBase accessionNone
Sequence
0- GGUAGGGAUUUGUGCAUUCUG -21
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Mature sequence

Snu-Mir-92-o37_3p

mirBase accessionNone
Sequence
37- AAUUGCACUUGUCCCGGCCUGC -59
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