| MirGeneDB ID | Snu-Mir-92-o38 |
|---|
| Family name |
MIR-92 (all species) |
|---|
| Seed |
AUUGCAC |
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| Species |
Peanut worm (Sipunculus nudus) |
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| MiRBase ID |
|
|---|
| Paralogues |
Snu-Mir-92-o36
Snu-Mir-92-o37
Snu-Mir-92-o39
Snu-Mir-92-o40
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Cte-Mir-92-o38
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
S. nudus
|
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| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049309.1: 91520435-91520495 [+]
|
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Precursor
(pre-Mir +30nt flank) |
UAUAUUCUUCCUGGUGACUCACCCUCAAGCAGGCCUGACUUGUGCAACUUGCAUAUAUACAUCAGGACAAAUUGCACUUGUCCCGGCCUGCCUGAUGGAUGCAGUCUUCUCAUCAGAAUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAUAUUCUUCCUGGUGACUCA-- C A U-| UU C CAUAUAU
CC UCA GCAGGCC GAC GUGCAA UUG A
GG AGU CGUCCGG CUG CACGUU AAC C
CGUAAGACUACUCUUCUGACGUA U C CC^ UU A AGGACUA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Snu-Mir-92-o38_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGCCUGACUUGUGCAACUUG -21
Get sequence
|
|---|
| Mature sequence |
Snu-Mir-92-o38_3p |
| mirBase accession | None |
|---|
| Sequence |
39- AAUUGCACUUGUCCCGGCCUGC -61
Get sequence
|
|---|
