MirGeneDB 2.1

MirGeneDB ID

Cte-Mir-92-o38

Family name MIR-92 (all species)
Seed AUUGCAC
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-92c
Paralogues Cte-Mir-92-o36  Cte-Mir-92-o37 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. teleta
Node of Origin (family) Bilateria
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_14: 594225-594286 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o38)
Mir-92-o38 CAPTEscaffold_14: 594225-594286 [-] Ensembl
Mir-92-o37 CAPTEscaffold_14: 594348-594403 [-] Ensembl
Mir-92-o36 CAPTEscaffold_14: 595238-595297 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GCGACUCUCUUAUUAUUACGUCAGUGAAGGAGGUCGUGACAAGCGGCAAUCCUGGUCUGGCUGAUGCUCCAAUUGCACUUGUCCCGGCCUGCUCAGACUGACCUCUCACGUCAUUGCCAUCG
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Structure
        10         20         30        40        50        60 
GCGACUCUCUUAUUAUUAC-      GA-| G      U      CG     CCUGGUCUGG 
                    GUCAGU   AG AGGUCG GACAAG  GCAAU          \
                    CAGUCA   UC UCCGGC CUGUUC  CGUUA          C
GCUACCGUUACUGCACUCUC      GAC^ G      C      A-     ACCUCGUAGU 
120       110       100        90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cte-Mir-92-o38_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGUCGUGACAAGCGGCAAUCC -22
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Mature sequence

Cte-Mir-92-o38_3p

mirBase accessionMIMAT0009522
Sequence
40- AAUUGCACUUGUCCCGGCCUGC -62
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