| MirGeneDB ID | Efe-Mir-92-o40 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-92-o39
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
Snu-Mir-92-o40
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(Efe_combined) |
Efet.01.539975: 113-174 [+]
|
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Precursor
(pre-Mir +30nt flank) |
CGCUUUAAUACGUCUAUGAAUGCCGUCGGUGGGUUGUGACUGGAGCAAUCUGUUACCUCUGCUUGAAUCAAAUUGCACUAGUCCCGGCCUGCUGACUGCAGAUCCAUCGUGACUGCAGCAGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGCUUUAAUACGUCUAU- A-| C UG U A C UUACCUC
GA UGC GUCGG GGUUG GACUGG GCAAU UG U
CU ACG CAGUC CCGGC CUGAUC CGUUA AC G
UGACGACGUCAGUGCUAC AG^ U GU C A A UAAGUUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. Also there is a second Drosha cut -1 relative to hwat is annotated here. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-92-o40_5p* |
| mirBase accession | None |
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| Sequence |
0- GGGUUGUGACUGGAGCAAUCUG -22
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-92-o40_3p |
| mirBase accession | None |
|---|
| Sequence |
40- AAUUGCACUAGUCCCGGCCUGC -62
Get sequence
|
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