MirGeneDB 3.0

MirGeneDB ID

Efe-Mir-92-o39

Family name MIR-92 (all species)
Seed AUUGCAC
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-92-o40 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92  Snu-Mir-92-o39 
Node of Origin (locus) E. fetida
Node of Origin (family) Bilateria
Genome context
(Efe_combined)
Efet.01.162814: 4080-4143 [-]
Precursor
(pre-Mir +30nt flank)
UGAGCCAUAUUGGCGUCGAAUCAGGAAAACAGGUCUGUUUUGGUGCAAACUUGGUUUCAUUGGCUAUAUUCCAAUUGCACUGAUCCCGGCCUGCUUGACUUGAAAAUGUCUUUAUUGCCAAUUA
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Structure
        10        20          30        40        50        60  
UGAGCCAUAUUGGCGUCGAA-     AA  -|     UGUU UG      AC    UUUCAUU 
                     UCAGG  AA CAGGUC    U  GUGCAA  UUGG       G
                     AGUUC  UU GUCCGG    A  CACGUU  AACC       G
AUUAACCGUUAUUUCUGUAAA     AG  C^     CCCU GU      --    UUAUAUC 
  120       110       100        90        80          70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Efe-Mir-92-o39_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGUCUGUUUUGGUGCAAACUUGG -24
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Mature sequence

Efe-Mir-92-o39_3p

mirBase accessionNone
Sequence
42- AAUUGCACUGAUCCCGGCCUGC -64
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