MirGeneDB 2.1
MirGeneDB ID

Bfl-Mir-92-o4

Family name MIR-92 (all species)
Seed AUUGCAC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-92b
Paralogues Bfl-Mir-92-o1  Bfl-Mir-92-o2  Bfl-Mir-92-o3  Bfl-Mir-92-o5  Bfl-Mir-92-o6  Bfl-Mir-92-o7  Bfl-Mir-92-o8 
Orthologues Asu-Mir-92  Bla-Mir-92-o4  Cel-Mir-92  Dan-Mir-92-P4  Dme-Mir-92-P4  Dmo-Mir-92-P4  Dsi-Mir-92-P4  Dya-Mir-92-P4  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049981.1: 13639441-13639502 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-92-o4)		 Mir-92-o3 NC_049981.1: 13639020-13639073 [+] UCSC
Mir-92-o4 NC_049981.1: 13639441-13639502 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CAGGUCGCUCAAGAUACGGCGUUGUUGCUUAGGUCUGGACAGUUGCAAUCUUCGUUCUGUUUCAGCCGAACAUUGCACUCGUCCCGGCCUGAGAAACCGCGCCAAUUUUCAACUCAACUGUG
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Structure
        10          20        30        40         50        60
CAGGUCGCUCAAGAUAC--     U   G        U    -|  U     C  CGUUCUG 
                   GGCGU GUU CUUAGGUC GGAC AGU GCAAU UU       U
                   CCGCG CAA GAGUCCGG CCUG UCA CGUUA AA       U
GUGUCAACUCAACUUUUAA     C   A        C    C^  -     C  GCCGACU 
120       110       100        90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Bfl-Mir-92-o4_5p*
mirBase accessionMIMAT0019143
Sequence 
0- AGGUCUGGACAGUUGCAAUCUU -22
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Mature sequence

Bfl-Mir-92-o4_3p
mirBase accessionMIMAT0009479
Sequence 
40- CAUUGCACUCGUCCCGGCCUGA -62
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