Mir-92-o6

MirGeneDB ID

Bfl-Mir-92-o6

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

bfl-mir-92d

Paralogues

Bfl-Mir-92-o1 Bfl-Mir-92-o2 Bfl-Mir-92-o3 Bfl-Mir-92-o4 Bfl-Mir-92-o5 Bfl-Mir-92-o7 Bfl-Mir-92-o8

Orthologues

Asu-Mir-92 Bla-Mir-92-o6 Cel-Mir-92 Dan-Mir-92-P6 Dme-Mir-92-P6 Dmo-Mir-92-P6 Dsi-Mir-92-P6 Dya-Mir-92-P6a Dya-Mir-92-P6b Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

Branchiostoma

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049979.1: 12400557-12400617 [-] UCSC

Precursor
(pre-Mir +30nt flank)

UUCUAACGCAGCCCUUUCUGUGUGAUUGAUAGGUCAGGAUUGAGUGUUAUGCUGUGAACUUGCUGUCAGUAUUGCACUUAUCCUGGCCUGUCAAUUAUGGCAGCUUCUCACCAGGGUGCAG

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Structure

        10         20         30        40        50        60
UUCUAACGCAGCCCUUU-   -|                   U      U     GUGAAC 
                  CUG UGUGAUUGAUAGGUCAGGAU GAGUGU AUGCU      U
                  GAC GUAUUAACUGUCCGGUCCUA UUCACG UAUGA      U
GACGUGGGACCACUCUUC   G^                   -      U     CUGUCG 
 .       110       100        90        80         70

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Bfl-Mir-92-o6_5p*

mirBase accession

MIMAT0020079

Sequence

0- AGGUCAGGAUUGAGUGUUAUGCU -23

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Mature sequence

Bfl-Mir-92-o6_3p

mirBase accession

None

Sequence

39- UAUUGCACUUAUCCUGGCCUGU -61

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