MirGeneDB ID | Bla-Mir-92-o6 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
European lancelet (Branchiostoma lanceolatum) |
MiRBase ID |
|
Paralogues |
Bla-Mir-92-o1
Bla-Mir-92-o2
Bla-Mir-92-o3
Bla-Mir-92-o4
Bla-Mir-92-o5
Bla-Mir-92-o7
Bla-Mir-92-o8
|
Orthologues |
Asu-Mir-92
Bfl-Mir-92-o6
Cel-Mir-92
Dan-Mir-92-P6
Dme-Mir-92-P6
Dmo-Mir-92-P6
Dsi-Mir-92-P6
Dya-Mir-92-P6a
Dya-Mir-92-P6b
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
Branchiostoma
|
Node of Origin (family) |
Bilateria
|
Genome context (BraLan2) |
Sc0000062: 529343-529403 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGUAGCUCCGCCCCCUCUGUGUGAUGGACAGGUCAGGAUGGGGUGUUAUGCUGUGAACUUGGUGUCAGUAUUGCACUUAUCCUGGCCUGUCAAUUACGGCAGCUUCUCACCUGCGUGCAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAGUAGCUCCGCCCCCU- -| G G U GUGAAC
CUG UGUGAU GACAGGUCAGGAUGGG UGU AUGCU U
GAC GCAUUA CUGUCCGGUCCUAUUC ACG UAUGA U
GACGUGCGUCCACUCUUC G^ A - U CUGUGG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Bla-Mir-92-o6_5p* |
mirBase accession | None |
Sequence |
0- AGGUCAGGAUGGGGUGUUAUGCU -23
Get sequence
|
Mature sequence |
Bla-Mir-92-o6_3p |
mirBase accession | None |
Sequence |
39- UAUUGCACUUAUCCUGGCCUGU -61
Get sequence
|