| MirGeneDB ID | Bla-Mir-92-o7 |
|---|
| Family name |
MIR-92 (all species) |
|---|
| Seed |
AAGGCAA |
|---|
| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bla-Mir-92-o1
Bla-Mir-92-o2
Bla-Mir-92-o3
Bla-Mir-92-o4
Bla-Mir-92-o5
Bla-Mir-92-o6
Bla-Mir-92-o8
|
|---|
| Orthologues |
Asu-Mir-92
Bfl-Mir-92-o7
Cel-Mir-92
Dan-Mir-92-P7
Dme-Mir-92-P7
Dsi-Mir-92-P7
Dya-Mir-92-P7
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(BraLan2) |
Sc0000030: 2297031-2297088 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGUGUAUGAACACUUCUGUUGGACCCCCUUCAAGGCAAAUAGCUGCAAUCCUUUAUAUUUAUCAAGUAUUGCACUUUUUUGCUUUGAAAGGUGUUUUGACAUUUCCAUCAUUCCAGUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUGUAUGAACACUUCU- UG - C C U-| C C UUAUA
GU G AC CC UUCAAGGCAAA AG UGCAAU CU U
CA U UG GG AAGUUUCGUUU UC ACGUUA GA U
AUGACCUUACUACCUUUA GU U U A UU^ - U ACUAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bla-Mir-92-o7_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CAAGGCAAAUAGCUGCAAUCCU -22
Get sequence
|
|---|
| Star sequence |
Bla-Mir-92-o7_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UAUUGCACUUUUUUGCUUUGAA -58
Get sequence
|
|---|
