MirGeneDB 2.1

MirGeneDB ID

Bla-Mir-92-o7

Family name MIR-92 (all species)
Seed AAGGCAA
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-92-o1  Bla-Mir-92-o2  Bla-Mir-92-o3  Bla-Mir-92-o4  Bla-Mir-92-o5  Bla-Mir-92-o6  Bla-Mir-92-o8 
Orthologues Asu-Mir-92  Bfl-Mir-92-o7  Cel-Mir-92  Dan-Mir-92-P7  Dme-Mir-92-P7  Dsi-Mir-92-P7  Dya-Mir-92-P7  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)
Sc0000030: 2297031-2297088 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGUAUGAACACUUCUGUUGGACCCCCUUCAAGGCAAAUAGCUGCAAUCCUUUAUAUUUAUCAAGUAUUGCACUUUUUUGCUUUGAAAGGUGUUUUGACAUUUCCAUCAUUCCAGUA
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Structure
        10         20         30        40         50        
GGUGUAUGAACACUUCU-  UG -  C  C           U-| C      C  UUAUA 
                  GU  G AC CC UUCAAGGCAAA  AG UGCAAU CU     U
                  CA  U UG GG AAGUUUCGUUU  UC ACGUUA GA     U
AUGACCUUACUACCUUUA  GU U  U  A           UU^ -      U  ACUAU 
      110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Bla-Mir-92-o7_5p

mirBase accessionNone
Sequence
0- CAAGGCAAAUAGCUGCAAUCCU -22
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Star sequence

Bla-Mir-92-o7_3p*

mirBase accessionNone
Sequence
36- UAUUGCACUUUUUUGCUUUGAA -58
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