MirGeneDB ID | Bla-Mir-92-o5 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
European lancelet (Branchiostoma lanceolatum) |
MiRBase ID |
|
Paralogues |
Bla-Mir-92-o1
Bla-Mir-92-o2
Bla-Mir-92-o3
Bla-Mir-92-o4
Bla-Mir-92-o6
Bla-Mir-92-o7
Bla-Mir-92-o8
|
Orthologues |
Asu-Mir-92
Bfl-Mir-92-o5
Cel-Mir-92
Dan-Mir-92-P5
Dme-Mir-92-P5
Dmo-Mir-92-P5
Dsi-Mir-92-P5
Dya-Mir-92-P5
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
Branchiostoma
|
Node of Origin (family) |
Bilateria
|
Genome context (BraLan2) |
Sc0000062: 528964-529022 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACAGGGCAUGUCAGGUAUAUGUGGCUGGUAGGCUGGGAUAAGUUGCAGUGCUCUAUCUGUAGCCAGUAUUGCACUUGUUCCGUCCUGUUGGCCAUGGCAACUUCCCCUGCAUUUGUAG
Get precursor sequence
|
Structure | 10 20 30 40 50
AACAGGGCAUGUCAGGUAUAU--| GG C U CUAUC
GUGGCU UAGG UGGGAUAAGU GCAGUGCU U
UACCGG GUCC GCCUUGUUCA CGUUAUGA G
GAUGUUUACGUCCCCUUCAACGG^ UU U - CCGAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Bla-Mir-92-o5_5p* |
mirBase accession | None |
Sequence |
0- AGGCUGGGAUAAGUUGCAGUGCU -23
Get sequence
|
Mature sequence |
Bla-Mir-92-o5_3p |
mirBase accession | None |
Sequence |
37- UAUUGCACUUGUUCCGUCCUGU -59
Get sequence
|