MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-92-o4

Family name MIR-92 (all species)
Seed AUUGCAC
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-92-o1  Bla-Mir-92-o2  Bla-Mir-92-o3  Bla-Mir-92-o5  Bla-Mir-92-o6  Bla-Mir-92-o7  Bla-Mir-92-o8 
Orthologues Aae-Mir-92-P4  Aga-Mir-92-P4  Asu-Mir-92  Bfl-Mir-92-o4  Bge-Mir-92-P4  Cel-Mir-92  Dan-Mir-92-P4  Dlo-Mir-92-P4  Dma-Mir-92-P4  Dme-Mir-92-P4  Dmo-Mir-92-P4  Dpu-Mir-92-P4  Dsi-Mir-92-P4  Dya-Mir-92-P4  Esc-Mir-92  Gpa-Mir-92-P4  Gsp-Mir-92  Hme-Mir-92-P4  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92  Tca-Mir-92-P4 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)		 Sc0000007: 2890480-2890541 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGUGACUGAAGACACGGCGUCUUUGCUCAGGUCUGGACAGUUGCAAUCUUCGUUCUGUCUCAGCCGAACAUUGCACUCGUCCCGGCCUGAGAAAUCCCGCCAAUUUUCAACGCAACUGCC
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Structure
        10          20        30        40         50        60
CAGGUGACUGAAGACAC--    UCUUUG        U    -|  U     C  CGUUCUG 
                   GGCG      CUCAGGUC GGAC AGU GCAAU UU       U
                   CCGC      GAGUCCGG CCUG UCA CGUUA AA       C
CCGUCAACGCAACUUUUAA    CCUAAA        C    C^  -     C  GCCGACU 
120       110       100        90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
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Star sequence

Bla-Mir-92-o4_5p*
mirBase accessionNone
Sequence 
0- AGGUCUGGACAGUUGCAAUCUU -22
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Mature sequence

Bla-Mir-92-o4_3p
mirBase accessionNone
Sequence 
40- CAUUGCACUCGUCCCGGCCUGA -62
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