MirGeneDB ID | Dpu-Mir-92-P4 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
dpu-mir-92
|
Paralogues |
Dpu-Mir-92-P3
|
Orthologues |
Aae-Mir-92-P4
Aga-Mir-92-P4
Asu-Mir-92
Bfl-Mir-92-o4
Bge-Mir-92-P4
Bla-Mir-92-o4
Cel-Mir-92
Dan-Mir-92-P4
Dlo-Mir-92-P4
Dma-Mir-92-P4
Dme-Mir-92-P4
Dmo-Mir-92-P4
Dsi-Mir-92-P4
Dya-Mir-92-P4
Esc-Mir-92
Gpa-Mir-92-P4
Gsp-Mir-92
Hme-Mir-92-P4
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
Tca-Mir-92-P4
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Bilateria
|
Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_38: 876332-876391 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCAAUUCACCUUGAUAGUCAACCUUAUGAAGGCUUUGACUUGGGCAACUUCGUUUAAAUGUUUGUCGAAUUGCACUCGUCCCGGCCUGCUUAACUGGACUAAAAAAACUUCAUAUGAUA
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCAAUUCACCUUGAUA---| AACC UGA UU UUGG C UUUAAA
GUC UUA AGGCU GAC GCAA UUCG \
CAG AAU UCCGG CUG CGUU AAGC U
AUAGUAUACUUCAAAAAAAU^ GUC- UCG CC CUCA - UGUUUG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dpu-Mir-92-P4_5p* |
mirBase accession | None |
Sequence |
0- AGGCUUUGACUUGGGCAACUUCG -23
Get sequence
|
Mature sequence |
Dpu-Mir-92-P4_3p |
mirBase accession | MIMAT0012672 |
Sequence |
38- AAUUGCACUCGUCCCGGCCUGC -60
Get sequence
|