MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-92-o8

Family name MIR-92 (all species)
Seed AUUGCAC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-2063
Paralogues Bfl-Mir-92-o1  Bfl-Mir-92-o2  Bfl-Mir-92-o3  Bfl-Mir-92-o4  Bfl-Mir-92-o5  Bfl-Mir-92-o6  Bfl-Mir-92-o7 
Orthologues Asu-Mir-92  Bla-Mir-92-o8  Cel-Mir-92  Dan-Mir-92-P8  Dme-Mir-92-P8  Dmo-Mir-92-P8  Dsi-Mir-92-P8  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049986.1: 9122708-9122772 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCGGUAUUCUGGAAUUUGAGGCUCACUUUCAAAAAGCAAAAAGUUGCAAUAUCGGUAUACGACGUUACGUAGAUAUUGCACUAAUUUGCUUUUGAAAGUGGUACCUACCAUUCAUCCAUCUCUUU
Get precursor sequence
Structure
        10         20         30        40         50        60  
CCGGUAUUCUGGAAUUUG-   C-|           A     A-   U        GGUAUACG 
                   AGG  UCACUUUCAAAA GCAAA  AGU GCAAUAUC        A
                   UCC  GGUGAAAGUUUU CGUUU  UCA CGUUAUAG        C
UUUCUCUACCUACUUACCA   AU^           -     AA   -        AUGCAUUG 
   120       110       100        90         80         70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Bfl-Mir-92-o8_5p* (predicted)
mirBase accessionNone
Sequence 
0- AAAAAGCAAAAAGUUGCAAUAUC -23
Get sequence
Mature sequence

Bfl-Mir-92-o8_3p
mirBase accessionMIMAT0009989
Sequence 
43- UAUUGCACUAAUUUGCUUUUGA -65
Get sequence