Mir-92-o71

MirGeneDB ID

Cin-Mir-92-o71

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-4038

Paralogues

Cin-Mir-92-o69 Cin-Mir-92-o70 Cin-Mir-92-o72 Cin-Mir-92-o73 Cin-Mir-92-o74 Cin-Mir-92-o75 Cin-Mir-92-o76 Cin-Mir-92-o77 Cin-Mir-92-o78

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

C. intestinalis

Node of Origin (family)

Bilateria

Genome context
(ci3)

1: 1926125-1926182 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o71)

Mir-92-o69 1: 1925379-1925436 [+] UCSC Ensembl
Mir-92-o70 1: 1925679-1925732 [+] UCSC Ensembl
Mir-92-o71 1: 1926125-1926182 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAAACAAAUUCAAGUCUUGGUAAUUGGAAUCGGUCAAUACCAGAUGCAAAUCAAGUUCAAUGUUGCAUUGCACUGUUAUUGAUCUAGUUCCCAUUCAUCAAAUGUUCAACACACCAAU

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Structure

        10         20         30         40        50        
UAAACAAAUUCAAGUCU-    -   U     C-|       C   A     AU  AGUU 
                  UGGU AAU GGAAU  GGUCAAUA CAG UGCAA  CA    C
                  ACUA UUA CCUUG  CUAGUUAU GUC ACGUU  GU    A
UAACCACACAACUUGUAA    C   C     AU^       U   -     AC  UGUA 
      110       100        90        80         70        60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.

3' NTU

Motifs

Tissue expression

C-	C-	C-	C-	C-	C-	C-	C-	C-	C-	Ga	La	La

Star sequence

Cin-Mir-92-o71_5p*

mirBase accession

MIMAT0016565

Sequence

0- CGGUCAAUACCAGAUGCAAAUCA -23

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Mature sequence

Cin-Mir-92-o71_3p

mirBase accession

MIMAT0016566

Sequence

35- CAUUGCACUGUUAUUGAUCUAGU -58

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