MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-92-o70

Family name MIR-92 (all species)
Seed AUUGCAC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-92e
Paralogues Cin-Mir-92-o69  Cin-Mir-92-o71  Cin-Mir-92-o72  Cin-Mir-92-o73  Cin-Mir-92-o74  Cin-Mir-92-o75  Cin-Mir-92-o76  Cin-Mir-92-o77  Cin-Mir-92-o78 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) C. intestinalis
Node of Origin (family) Bilateria
Genome context
(ci3)
1: 1925679-1925732 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o70)
Mir-92-o69 1: 1925379-1925436 [+] UCSC Ensembl
Mir-92-o70 1: 1925679-1925732 [+] UCSC Ensembl
Mir-92-o71 1: 1926125-1926182 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGUAAAACAAAACUGCGGCGCUGCAGGUCGGUGUGGGUGGGUGCAUGAAUCGUUGUGAAUUAUUGCACUUCCCUAGACUGGUCUGCUUGUCGCAUUUACUUCGAAAUUUCGG
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Structure
        10           20        30        40        50      
CUGGUAAAACAAAACUG---|    CU    GU    G    UG      UG   CGU 
                    CGGCG  GCAG  CGGU UGGG  GGUGCA  AAU   U
                    GCUGU  CGUC  GUCA AUCC  UCACGU  UUA   G
GGCUUUAAAGCUUCAUUUAC^    U-    UG    G    CU      UA   AGU 
  110       100        90         80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Star sequence

Cin-Mir-92-o70_5p*

mirBase accessionMIMAT0016421
Sequence
0- CGGUGUGGGUGGGUGCAUGAAU -22
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Mature sequence

Cin-Mir-92-o70_3p

mirBase accessionMIMAT0016422
Sequence
32- UAUUGCACUUCCCUAGACUGGU -54
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