Mir-92-o78

MirGeneDB ID

Cin-Mir-92-o78

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-4009b

Paralogues

Cin-Mir-92-o69 Cin-Mir-92-o70 Cin-Mir-92-o71 Cin-Mir-92-o72 Cin-Mir-92-o73 Cin-Mir-92-o74 Cin-Mir-92-o75 Cin-Mir-92-o76 Cin-Mir-92-o77

Orthologues

Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

C. intestinalis

Node of Origin (family)

Bilateria

Genome context
(ci3)

HT000037.1: 4884-4935 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-o78)

Mir-92-o78 HT000037.1: 4884-4935 [-] UCSC Ensembl
Mir-92-o77 HT000037.1: 4978-5031 [-] UCSC Ensembl
Mir-92-o76 HT000037.1: 5092-5146 [-] UCSC Ensembl
Mir-92-o75 HT000037.1: 5191-5250 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AACUCCCAUCUAAACACGAAUGACAGUCAUGGUAUGUUUAGUGUUCAAGAGCAAGCAUAGCUAUUGCACACUAAUGUACCCUGGCUGUUUUAUCACUCUCAACAACGAAGAA

Get precursor sequence

Structure

        10         20         30        40        50      
AACUCCCAUCUAAACAC-  AU-|       U        U     U   G   AAG 
                  GA   GACAGUCA GGUAUGUU AGUGU CAA AGC   \
                  CU   UUGUCGGU CCAUGUAA UCACA GUU UCG   C
AAGAAGCAACAACUCUCA  AUU^       C        -     C   A   AUA 
110       100        90        80         70        60

Deep sequencing

Go to detailed chart

Comment

It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

C-	C-	C-	C-	C-	C-	C-	C-	C-	C-	Ga	La	La

Star sequence

Cin-Mir-92-o78_5p*

mirBase accession

MIMAT0016503

Sequence

0- GGUAUGUUUAGUGUUCAAGAGC -22

Get sequence

Mature sequence

Cin-Mir-92-o78_3p

mirBase accession

MIMAT0016504

Sequence

31- UAUUGCACACUAAUGUACCCU -52

Get sequence