MirGeneDB 3.0

MirGeneDB ID

Spu-Mir-92-o17

Family name MIR-92 (all species)
Seed AUUGCAC
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID
Paralogues Spu-Mir-92-o13  Spu-Mir-92-o14  Spu-Mir-92-o15  Spu-Mir-92-o16  Spu-Mir-92-o18  Spu-Mir-92-o19  Spu-Mir-92-o20 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92  Sro-Mir-92-P17 
Node of Origin (locus) S. purpuratus
Node of Origin (family) Bilateria
Genome context
(Spur_5.0)
AAGJ06000006.1: 26943673-26943760 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-92-o17)
Mir-92-o16 AAGJ06000006.1: 26944529-26944593 [-] Ensembl
Mir-92-o15 AAGJ06000006.1: 26944977-26945042 [-] Ensembl
Mir-92-o14 AAGJ06000006.1: 26946651-26946718 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCGUAGCUGUGAUCAUUAACCAAAUCGUGCUGGUCAGGAUGCUUGCAGUGCUGUGGCUUGCUCGUCUUAUGACGAGCAAAACUAAAGCUUUCUUAGUAUUGCACUCGUCCCGGCCAGUAGGGUAUCUGGUAUAAAACAUCUUAGGCGG
Get precursor sequence
Structure
        10        20          30        40        50        60        70   
UCGUAGCUGUGAUCAUUA    A--|  G        A     CU         GUGGCUUGCUCGUCUUAUGA 
                  ACCA   AUC UGCUGGUC GGAUG  UGCAGUGCU                    C
                  UGGU   UGG AUGACCGG CCUGC  ACGUUAUGA                    G
GGCGGAUUCUACAAAAUA    CUA^  G        C     UC         UUCUUUCGAAAUCAAAACGA 
      140       130       120       110       100        90        80
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Star sequence

Spu-Mir-92-o17_5p*

mirBase accessionNone
Sequence
0- UGGUCAGGAUGCUUGCAGUGCU -22
Get sequence
Mature sequence

Spu-Mir-92-o17_3p

mirBase accessionNone
Sequence
66- UAUUGCACUCGUCCCGGCCAGU -88
Get sequence