| MirGeneDB ID | Spu-Mir-92-o20 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Purple sea urchin (Strongylocentrotus purpuratus) |
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| MiRBase ID |
|
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| Paralogues |
Spu-Mir-92-o13
Spu-Mir-92-o14
Spu-Mir-92-o15
Spu-Mir-92-o16
Spu-Mir-92-o17
Spu-Mir-92-o18
Spu-Mir-92-o19
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
Sro-Mir-92-P20
|
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| Node of Origin (locus) |
S. purpuratus
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(Spur_5.0) |
AAGJ06000006.1: 15042909-15042971 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AUAGUGGUCUCCAAUUUGGCUGUUUUUGACAGGGCGAGGCUUGUGUAAUCCUGUGUUUAUUGAAUGGCCAGUAUUGCACUCCCCCCGGCCUUUGAAUGACAGCUACCUACAUCAAGCAUCAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUAGUGGUCUCCAAUUU-- -| UG C G A CUU C GUGUUUAU
GGCUGUU UU A AGG CG GG GUGUAAU CU \
UCGACAG AA U UCC GC CC CACGUUA GA U
CUACUACGAACUACAUCCA U^ GU - G C CCU U CCGGUAAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Spu-Mir-92-o20_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGGCGAGGCUUGUGUAAUCCU -22
Get sequence
|
|---|
| Mature sequence |
Spu-Mir-92-o20_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UAUUGCACUCCCCCCGGCCUUU -63
Get sequence
|
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