MirGeneDB 3.0

MirGeneDB ID

Spu-Mir-92-o19

Family name MIR-92 (all species)
Seed AUUGCAC
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID
Paralogues Spu-Mir-92-o13  Spu-Mir-92-o14  Spu-Mir-92-o15  Spu-Mir-92-o16  Spu-Mir-92-o17  Spu-Mir-92-o18  Spu-Mir-92-o20 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92  Sro-Mir-92-P19 
Node of Origin (locus) S. purpuratus
Node of Origin (family) Bilateria
Genome context
(Spur_5.0)
AAGJ06000006.1: 15043364-15043426 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUGGUGUACUAUGUUGGGGUUGUCAGAUAGGUCGUGGUGAGUGCAAUGUUCUGUUGUCUCGAAUGAAAAUAUUGCACUUACCCCGGCUUAUUUGCAGCUACCUAUCUUUGAUCUGCAUGUU
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Structure
        10           20        30        40        50        60 
GGCUGGUGUACUAUGUU--  -|    U           U               CUGUUGUC 
                   GG GGUUG CAGAUAGGUCG GGUGAGUGCAAUGUU        \
                   CC UCGAC GUUUAUUCGGC CCAUUCACGUUAUAA        U
UUGUACGUCUAGUUUCUAU  A^    -           C               AAGUAAGC 
 120       110       100         90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Star sequence

Spu-Mir-92-o19_5p*

mirBase accessionNone
Sequence
0- AGGUCGUGGUGAGUGCAAUGUU -22
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Mature sequence

Spu-Mir-92-o19_3p

mirBase accessionNone
Sequence
41- UAUUGCACUUACCCCGGCUUAU -63
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