| MirGeneDB ID | Sro-Mir-92-P19 |
|---|
| Family name |
MIR-92 (all species) |
|---|
| Seed |
AUUGCAC |
|---|
| Species |
Roscoff worm (Symsagittifera roscoffensis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Sro-Mir-92-P16
Sro-Mir-92-P17
Sro-Mir-92-P18
Sro-Mir-92-P20
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
Spu-Mir-92-o19
|
|---|
| Node of Origin (locus) |
S. roscoffensis
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(GCA_025153585.1_SymRos_1_5_genomic) |
JANVAR010000525.1: 3084-3156 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGGAGCUCAUAUCUAGGACUUUGAGCUUAUCAGGCCUACUUUGUGUAUGUAUUCUACAAUUGAAACUUAAACUUUGUGAAUAUUGCACUUGGCUCGGCCUCAUAGCUCAUUGUCACGUACAAUGUCUCUUAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGGAGCUCAUAUCUAGG---| UU U C UA- UU U CUACAAUUGAAA
AC UGAGCU AU AGGCC CU GUGUA GUAUU \
UG ACUCGA UA UCCGG GG CACGU UAUAA C
AGAUUCUCUGUAACAUGCAC^ UU - C CUC UU - GUGUUUCAAAUU
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Sro-Mir-92-P19_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGGCCUACUUUGUGUAUGUAUU -23
Get sequence
|
|---|
| Mature sequence |
Sro-Mir-92-P19_3p |
| mirBase accession | None |
|---|
| Sequence |
50- UAUUGCACUUGGCUCGGCCUCAU -73
Get sequence
|
|---|
