| MirGeneDB ID | Sro-Mir-92-P20 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Roscoff worm (Symsagittifera roscoffensis) |
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| MiRBase ID |
|
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| Paralogues |
Sro-Mir-92-P16
Sro-Mir-92-P17
Sro-Mir-92-P18
Sro-Mir-92-P19
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
Spu-Mir-92-o20
|
|---|
| Node of Origin (locus) |
S. roscoffensis
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(GCA_025153585.1_SymRos_1_5_genomic) |
JANVAR010000186.1: 1077764-1077832 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGUUUGUGACUCAAUUGAUCUGAAAAGAAUUGAGCAGCGUCCGAUGCAAAUAUCAGAGGAGUUUGUUCCCAAUCAGAUAUUGCACGGACUCUGAUCAAUCUCUUCGGUUCCUGCCACGAGUCGAACUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGUUUGUGACUCAAUUGAU---| A A G C A A AGAGGAGUUU
CUGAA AGA UUGA CAG GUCCG UGCAA UAUC \
GGCUU UCU AACU GUC CAGGC ACGUU AUAG G
ACUCAAGCUGAGCACCGUCCUU^ C - A U - - ACUAACCCUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Sro-Mir-92-P20_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGCAGCGUCCGAUGCAAAUAUC -24
Get sequence
|
|---|
| Mature sequence |
Sro-Mir-92-P20_3p |
| mirBase accession | None |
|---|
| Sequence |
47- UAUUGCACGGACUCUGAUCAAU -69
Get sequence
|
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