MirGeneDB 3.0

MirGeneDB ID

Dgr-Mir-92-o139

Family name MIR-92 (all species)
Seed AUUGCAC
Species Dimorphilus gyrociliatus (Dimorphilus gyrociliatus)
MiRBase ID
Paralogues Dgr-Mir-92-o140 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) D. gyrociliatus
Node of Origin (family) Bilateria
Genome context
(GCA_904063045.1_Dgyrociliatus)
CAJFCJ010000015.1: 712624-712682 [+]
Precursor
(pre-Mir +30nt flank)
AAUGAAUAAUAAUUUGACGCCCUCGCGGAGGGGCCUGGCUCGUGCAAAUUGGUGUAAAAUAGUUACAAAUUGCACCUGCCCCGGCCUGCCUUUGCGGCUUGUCAAAAAUCAACAAAGUG
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Structure
        10           20        30           40        50        
AAUGAAUAAUAAUUUGAC---|  CUC       --    U-   UC      A   GUGUAA 
                     GCC   GCGGAGG  GGCC  GGC  GUGCAA UUG      A
                     CGG   CGUUUCC  CCGG  CCG  CACGUU AAC      A
GUGAAACAACUAAAAACUGUU^  ---       GU    CC   UC      A   AUUGAU 
       110       100           90        80        70        60
Deep sequencing
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU Unknown
MotifsUGUG in loop
Star sequence

Dgr-Mir-92-o139_5p* (predicted)

mirBase accessionNone
Sequence
0- GGGCCUGGCUCGUGCAAAUUG -21
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Mature sequence

Dgr-Mir-92-o139_3p (predicted)

mirBase accessionNone
Sequence
37- AAUUGCACCUGCCCCGGCCUGC -59
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