MirGeneDB ID | Dgr-Mir-92-o139 |
---|---|
Family name | MIR-92 (all species) |
Seed | AUUGCAC |
Species | Dimorphilus gyrociliatus (Dimorphilus gyrociliatus) |
MiRBase ID | |
Paralogues | Dgr-Mir-92-o140 |
Orthologues | Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92 |
Node of Origin (locus) | D. gyrociliatus |
Node of Origin (family) | Bilateria |
Genome context (GCA_904063045.1_Dgyrociliatus) |
CAJFCJ010000015.1: 712624-712682 [+] |
Precursor (pre-Mir +30nt flank) | AAUGAAUAAUAAUUUGACGCCCUCGCGGAGGGGCCUGGCUCGUGCAAAUUGGUGUAAAAUAGUUACAAAUUGCACCUGCCCCGGCCUGCCUUUGCGGCUUGUCAAAAAUCAACAAAGUGGet precursor sequence |
Structure | 10 20 30 40 50 AAUGAAUAAUAAUUUGAC---| CUC -- U- UC A GUGUAA GCC GCGGAGG GGCC GGC GUGCAA UUG A CGG CGUUUCC CCGG CCG CACGUU AAC A GUGAAACAACUAAAAACUGUU^ --- GU CC UC A AUUGAU 110 100 90 80 70 60 |
Deep sequencing | |
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU | Unknown |
Motifs | UGUG in loop |
Star sequence | Dgr-Mir-92-o139_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGGCCUGGCUCGUGCAAAUUG -21
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|
Mature sequence | Dgr-Mir-92-o139_3p (predicted) |
mirBase accession | None |
Sequence |
37- AAUUGCACCUGCCCCGGCCUGC -59
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