MirGeneDB 3.0

MirGeneDB ID

Dgr-Mir-92-o140

Family name MIR-92 (all species)
Seed AUUGCAC
Species Dimorphilus gyrociliatus (Dimorphilus gyrociliatus)
MiRBase ID
Paralogues Dgr-Mir-92-o139 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) D. gyrociliatus
Node of Origin (family) Bilateria
Genome context
(GCA_904063045.1_Dgyrociliatus)
CAJFCJ010000015.1: 712837-712943 [+]
Precursor
(pre-Mir +30nt flank)
ACAAGAUCAUUGAUCUUGUUGAGUCGGCACAGGUUCGGAUGGGGUCAAUUUGAACAAAUAGCCGGAUUAAAUUGCUAGAAAAGAUAGGAGGGAAGGAACCUUUAAAGGGCUAACAAAUUGCACCUGUCCCGGCCUGAAACGGCUCUACGCAUCGUCGCUUCCUACAA
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Structure
        10          20        30        40        50        60        70        80   
ACAAGAUCAUUGAUCUU--| U      GCA     UC       GU       AACAAAUAGCCGGAUUAAAUUGCUAGAAAA 
                   GU GAGUCG   CAGGU  GGAUGGG  CAAUUUG                              \
                   CA CUCGGC   GUCCG  CCUGUCC  GUUAAAC                              G
AACAUCCUUCGCUGCUACG^ U      AAA     GC       AC       AAUCGGGAAAUUUCCAAGGAAGGGAGGAUA 
     160       150       140       130       120       110       100        90
Deep sequencing
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Dgr-Mir-92-o140_5p*

mirBase accessionNone
Sequence
0- AGGUUCGGAUGGGGUCAAUUUG -22
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Mature sequence

Dgr-Mir-92-o140_3p

mirBase accessionNone
Sequence
85- AAUUGCACCUGUCCCGGCCUGA -107
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