MirGeneDB ID | Dgr-Mir-92-o140 |
---|---|
Family name | MIR-92 (all species) |
Seed | AUUGCAC |
Species | Dimorphilus gyrociliatus (Dimorphilus gyrociliatus) |
MiRBase ID | |
Paralogues | Dgr-Mir-92-o139 |
Orthologues | Asu-Mir-92 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92 |
Node of Origin (locus) | D. gyrociliatus |
Node of Origin (family) | Bilateria |
Genome context (GCA_904063045.1_Dgyrociliatus) |
CAJFCJ010000015.1: 712837-712943 [+] |
Precursor (pre-Mir +30nt flank) | ACAAGAUCAUUGAUCUUGUUGAGUCGGCACAGGUUCGGAUGGGGUCAAUUUGAACAAAUAGCCGGAUUAAAUUGCUAGAAAAGAUAGGAGGGAAGGAACCUUUAAAGGGCUAACAAAUUGCACCUGUCCCGGCCUGAAACGGCUCUACGCAUCGUCGCUUCCUACAAGet precursor sequence |
Structure | 10 20 30 40 50 60 70 80 ACAAGAUCAUUGAUCUU--| U GCA UC GU AACAAAUAGCCGGAUUAAAUUGCUAGAAAA GU GAGUCG CAGGU GGAUGGG CAAUUUG \ CA CUCGGC GUCCG CCUGUCC GUUAAAC G AACAUCCUUCGCUGCUACG^ U AAA GC AC AAUCGGGAAAUUUCCAAGGAAGGGAGGAUA 160 150 140 130 120 110 100 90 |
Deep sequencing | |
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Dgr-Mir-92-o140_5p* |
mirBase accession | None |
Sequence |
0- AGGUUCGGAUGGGGUCAAUUUG -22
Get sequence
|
Mature sequence | Dgr-Mir-92-o140_3p |
mirBase accession | None |
Sequence |
85- AAUUGCACCUGUCCCGGCCUGA -107
Get sequence
|