MirGeneDB 2.1

MirGeneDB ID

Pfl-Mir-92-o44

Family name MIR-92 (all species)
Seed AUUGCAC
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-92-o41  Pfl-Mir-92-o42  Pfl-Mir-92-o43  Pfl-Mir-92-o45 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. flava
Node of Origin (family) Bilateria
Genome context
(Pfl)
LD343282.1: 115395-115459 [+]
Precursor
(pre-Mir +30nt flank)
UGACAUCCAGAAGAUACGACUGUGUUGUUUAGGCCGUGACAUGUACAAUGUUUGUGACUUUGACUUAGACCAAUAUUGCACUGGUCCCGGCCUGAAUAACACGGUUACUUGGCGACAAGGAACCU
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Structure
        10          20        30        40        50        60  
UGACAUCCAGAAGAUAC--|                  U   AU  A       UGUGACUUU 
                   GACUGUGUUGUUUAGGCCG GAC  GU CAAUGUU         \
                   UUGGCACAAUAAGUCCGGC CUG  CA GUUAUAA         G
UCCAAGGAACAGCGGUUCA^                  C   GU  C       CCAGAUUCA 
   120       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Pfl-Mir-92-o44_5p*

mirBase accessionNone
Sequence
0- AGGCCGUGACAUGUACAAUGUU -22
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Mature sequence

Pfl-Mir-92-o44_3p

mirBase accessionNone
Sequence
43- UAUUGCACUGGUCCCGGCCUGA -65
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