MirGeneDB 2.1

MirGeneDB ID

Pfl-Mir-92-o41

Family name MIR-92 (all species)
Seed AUUGCAC
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-92-o42  Pfl-Mir-92-o43  Pfl-Mir-92-o44  Pfl-Mir-92-o45 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. flava
Node of Origin (family) Bilateria
Genome context
(Pfl)
LD343282.1: 96920-96979 [+]
Precursor
(pre-Mir +30nt flank)
AUCAAAGUCCAUUCGUAGCUGCUAUCUCCCCGGCUCGGAUGAGGACAAUGUUGUGACGUCACUACCAAUAUUGCACUCGUCCCGGCCUUAGAGUGGCAGCACCUUUAUCGACCAAUGCCA
Get precursor sequence
Structure
        10           20        30        40        50         
AUCAAAGUCCAUUCGUA---|      U   CCC    C       GA       GUGACG 
                    GCUGCUA CUC   GGCU GGAUGAG  CAAUGUU      U
                    CGACGGU GAG   CCGG CCUGCUC  GUUAUAA      C
ACCGUAACCAGCUAUUUCCA^      -   AUU    C       AC       CCAUCA 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Star sequence

Pfl-Mir-92-o41_5p* (predicted)

mirBase accessionNone
Sequence
0- CGGCUCGGAUGAGGACAAUGUU -22
Get sequence
Mature sequence

Pfl-Mir-92-o41_3p

mirBase accessionNone
Sequence
38- UAUUGCACUCGUCCCGGCCUUA -60
Get sequence