| MirGeneDB ID | Pfl-Mir-92-o41 |
|---|
| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
|
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| Paralogues |
Pfl-Mir-92-o42
Pfl-Mir-92-o43
Pfl-Mir-92-o44
Pfl-Mir-92-o45
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
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| Node of Origin (locus) |
P. flava
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(Pfl) |
LD343282.1: 96920-96979 [+]
|
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Precursor
(pre-Mir +30nt flank) |
AUCAAAGUCCAUUCGUAGCUGCUAUCUCCCCGGCUCGGAUGAGGACAAUGUUGUGACGUCACUACCAAUAUUGCACUCGUCCCGGCCUUAGAGUGGCAGCACCUUUAUCGACCAAUGCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCAAAGUCCAUUCGUA---| U CCC C GA GUGACG
GCUGCUA CUC GGCU GGAUGAG CAAUGUU U
CGACGGU GAG CCGG CCUGCUC GUUAUAA C
ACCGUAACCAGCUAUUUCCA^ - AUU C AC CCAUCA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Pfl-Mir-92-o41_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CGGCUCGGAUGAGGACAAUGUU -22
Get sequence
|
|---|
| Mature sequence |
Pfl-Mir-92-o41_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UAUUGCACUCGUCCCGGCCUUA -60
Get sequence
|
|---|
