MirGeneDB 2.1

MirGeneDB ID

Pfl-Mir-92-o42

Family name MIR-92 (all species)
Seed AUUGCAC
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-92-o41  Pfl-Mir-92-o43  Pfl-Mir-92-o44  Pfl-Mir-92-o45 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. flava
Node of Origin (family) Bilateria
Genome context
(Pfl)
LD343282.1: 114848-114906 [+]
Precursor
(pre-Mir +30nt flank)
CGUUAUUAGGUCUCUCUGGCUCUGAUUAGAAGGUCAGGACUUGCGCAAUGUUGGUCAGACUGGCAAAUAUUGCACUCGUCCCGGCCUGCUAGUUUGGGUACUUGGCAUCGUAAGGCAAU
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Structure
        10          20        30        40        50         
CGUUAUUAGGUCUCUCUG--|   U      A     A    UUGC        GGUCAG 
                    GCUC GAUUAG AGGUC GGAC    GCAAUGUU      \
                    UGGG UUGAUC UCCGG CCUG    CGUUAUAA      A
UAACGGAAUGCUACGGUUCA^   U      G     C    CUCA        ACGGUC 
       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pfl-Mir-92-o42_5p*

mirBase accessionNone
Sequence
0- AGGUCAGGACUUGCGCAAUGUU -22
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Mature sequence

Pfl-Mir-92-o42_3p

mirBase accessionNone
Sequence
37- UAUUGCACUCGUCCCGGCCUGC -59
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