| MirGeneDB ID | Pfl-Mir-92-o45 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
|
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| Paralogues |
Pfl-Mir-92-o41
Pfl-Mir-92-o42
Pfl-Mir-92-o43
Pfl-Mir-92-o44
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
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| Node of Origin (locus) |
P. flava
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(Pfl) |
LD343282.1: 115958-116021 [+]
|
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Precursor
(pre-Mir +30nt flank) |
CCUAAAGUAUGUUAUCUGGUCGGACUGUAUAGGUUGGGACUUUUGCAAUUUCCUUCGAUAAUAUGACAGAGAUAUUGCACUCGUCCCGGCCUGUAUGUCGCGACUAUGCUCAUCCAUUGCGUGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCUAAAGUAUGUUAUCU-- -| U UUU U CUUCGAUA
GGUCG GAC GUAUAGGUUGGGAC UGCAAU UC A
UCAGC CUG UAUGUCCGGCCCUG ACGUUA AG U
CGUGCGUUACCUACUCGUA G^ - CUC U AGACAGUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pfl-Mir-92-o45_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGUUGGGACUUUUGCAAUUUC -22
Get sequence
|
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| Mature sequence |
Pfl-Mir-92-o45_3p |
| mirBase accession | None |
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| Sequence |
42- UAUUGCACUCGUCCCGGCCUGU -64
Get sequence
|
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