| MirGeneDB ID | Lhy-Mir-92-o108 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Laevipilina (Monoplacophora) (Laevipilina hyalina) |
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| MiRBase ID |
|
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| Paralogues |
Lhy-Mir-92-o103
Lhy-Mir-92-o104
Lhy-Mir-92-o105
Lhy-Mir-92-o106
Lhy-Mir-92-o107
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
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| Node of Origin (locus) |
L. hyalina
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(Mono_atcgn_nospaces) |
scaffold529593_49.1: 3118-3176 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUUUUUGUCGCAUACCUCGUGAUUUGUUUAGGCUGUGCCGUGUGCAGUAUUUGUUGUAAAAAGUCAAAUUGCACUCGUCCCGGCCUGCACUAGCACGUGAAAUCUACAAAUGCUUGAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUUUUUUGUCGCAUACCU---| AUUU U UGC U AU UUGUA
CGUG GU UAGGCUG CG GUGCAGU UUG \
GCAC CA GUCCGGC GC CACGUUA AAC A
UAGUUCGUAAACAUCUAAAGU^ GAU- C CCU U -- UGAAA
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as oLhyans pending additional data. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Lhy-Mir-92-o108_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGGCUGUGCCGUGUGCAGUAUUUG -24
Get sequence
|
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| Mature sequence |
Lhy-Mir-92-o108_3p |
| mirBase accession | None |
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| Sequence |
37- AAUUGCACUCGUCCCGGCCUGC -59
Get sequence
|
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