MirGeneDB 3.0

MirGeneDB ID

Lhy-Mir-92-o107

Family name MIR-92 (all species)
Seed AUUGCAC
Species Laevipilina (Monoplacophora) (Laevipilina hyalina)
MiRBase ID
Paralogues Lhy-Mir-92-o103  Lhy-Mir-92-o104  Lhy-Mir-92-o105  Lhy-Mir-92-o106  Lhy-Mir-92-o108 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) L. hyalina
Node of Origin (family) Bilateria
Genome context
(Mono_atcgn_nospaces)
scaffold529593_49.1: 3839-3899 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGGGUAACGCGACUCUGUUUGAAACGAGAAGGUGGUGACUUGUGCAAAUUUGGUGUUGUUUCAUUCCCAAUUGCACUCGUCCCGGCCUGCUUGUUUUGGGGAAAACGUCCAUAUUUGCCA
Get precursor sequence
Structure
        10          20        30         40        50        60 
AAGGGUAACGCGACUCUG--  UG       A   -|  U   UU      AU    UGUUGU 
                    UU  AAACGAG AGG UGG GAC  GUGCAA  UUGG      \
                    GG  UUUGUUC UCC GCC CUG  CACGUU  AACC      U
ACCGUUUAUACCUGCAAAAG  GU       G   G^  -   CU      --    CUUACU 
 .       110       100        90         80          70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as oLhyans pending additional data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Lhy-Mir-92-o107_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGUGGUGACUUGUGCAAAUUUGG -24
Get sequence
Mature sequence

Lhy-Mir-92-o107_3p

mirBase accessionNone
Sequence
39- AAUUGCACUCGUCCCGGCCUGC -61
Get sequence